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LOC123394019 lysine-specific demethylase 5D [ Mustela putorius furo (domestic ferret) ]

Gene ID: 123394019, updated on 16-Nov-2023

Summary

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Gene symbol
LOC123394019
Gene description
lysine-specific demethylase 5D
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
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Genomic context

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See LOC123394019 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421595.1 (159842..220087, complement)

NW_025421595.1Genomic Context describing neighboring genes Neighboring gene hsc70-interacting protein-like Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7-like Neighboring gene protein PBDC1-like Neighboring gene zinc finger X-chromosomal protein-like Neighboring gene eukaryotic translation initiation factor 2 subunit 3, X-linked-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025421595 Unplaced Scaffold Reference ASM1176430v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 5D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421595.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    159842..220087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045087449.1 → XP_044943384.1  lysine-specific demethylase 5D isoform X11

    UniProtKB/TrEMBL
    A0A8U0V7Y9
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:468 → 525
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:320 → 365
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
    cl22851
    Location:1178 → 1238
    PHD_SF; PHD finger superfamily

  2. XM_045087444.1 → XP_044943379.1  lysine-specific demethylase 5D isoform X6

    UniProtKB/TrEMBL
    A0A8U0SL63
    Conserved Domains (4) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:381 → 438
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15608
    Location:1091 → 1151
    PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D

  3. XM_045087442.1 → XP_044943377.1  lysine-specific demethylase 5D isoform X4

    UniProtKB/TrEMBL
    A0A8U0SIN2
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:474 → 531
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:326 → 371
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
    cl22851
    Location:1138 → 1198
    PHD_SF; PHD finger superfamily

  4. XM_045087439.1 → XP_044943374.1  lysine-specific demethylase 5D isoform X2

    UniProtKB/TrEMBL
    A0A8U0VA47
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:474 → 531
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:326 → 371
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
    cl22851
    Location:1184 → 1244
    PHD_SF; PHD finger superfamily

  5. XM_045087438.1 → XP_044943373.1  lysine-specific demethylase 5D isoform X1

    UniProtKB/TrEMBL
    A0A8U0SIF8
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:474 → 531
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:326 → 371
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
    cl22851
    Location:1184 → 1244
    PHD_SF; PHD finger superfamily

  6. XM_045087445.1 → XP_044943380.1  lysine-specific demethylase 5D isoform X7

    UniProtKB/TrEMBL
    A0A8U0V838
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:366 → 423
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:218 → 263
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cl28902
    Location:79 → 117
    ARID; ARID/BRIGHT DNA binding domain family
    cl22851
    Location:1076 → 1136
    PHD_SF; PHD finger superfamily

  7. XM_045087443.1 → XP_044943378.1  lysine-specific demethylase 5D isoform X5

    UniProtKB/TrEMBL
    A0A8U0V960
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:423 → 480
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:275 → 320
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
    cl22851
    Location:1133 → 1193
    PHD_SF; PHD finger superfamily

  8. XM_045087440.1 → XP_044943375.1  lysine-specific demethylase 5D isoform X3

    UniProtKB/TrEMBL
    A0A8U0SIC5
    Conserved Domains (5) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:468 → 525
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:320 → 365
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
    cl22851
    Location:1178 → 1238
    PHD_SF; PHD finger superfamily

  9. XM_045087446.1 → XP_044943381.1  lysine-specific demethylase 5D isoform X8

    UniProtKB/TrEMBL
    A0A8U0SJJ2
    Conserved Domains (3) summary
    smart00558
    Location:224 → 281
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:76 → 121
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cl22851
    Location:934 → 994
    PHD_SF; PHD finger superfamily

  10. XM_045087448.1 → XP_044943383.1  lysine-specific demethylase 5D isoform X10

    UniProtKB/TrEMBL
    A0A8U0SII3
    Conserved Domains (4) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:474 → 531
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:326 → 371
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D

  11. XM_045087447.1 → XP_044943382.1  lysine-specific demethylase 5D isoform X9

    UniProtKB/TrEMBL
    A0A8U0SKJ4
    Conserved Domains (4) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00558
    Location:474 → 531
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15604
    Location:326 → 371
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    cd16875
    Location:79 → 170
    ARID_KDM5C_5D; ARID/BRIGHT DNA binding domain of lysine-specific demethylase KDM5C and KDM5D
Nucleotide Protein
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