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LOC123394199 vacuolar protein-sorting-associated protein 36-like [ Mustela putorius furo (domestic ferret) ]

Gene ID: 123394199, updated on 16-Nov-2023

Summary

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Gene symbol
LOC123394199
Gene description
vacuolar protein-sorting-associated protein 36-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC123394199 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421896.1 (66240..75939, complement)

NW_025421896.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type-1 domain-containing protein 1-like Neighboring gene protein FAM81A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025421896 Unplaced Scaffold Reference ASM1176430v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein-sorting-associated protein 36-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421896.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    66240..75939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045087960.1 → XP_044943895.1  vacuolar protein-sorting-associated protein 36-like

    UniProtKB/TrEMBL
    A0A8U0SJE7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases