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LOC123394200 thrombospondin type-1 domain-containing protein 1-like [ Mustela putorius furo (domestic ferret) ]

Gene ID: 123394200, updated on 16-Nov-2023

Summary

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Gene symbol
LOC123394200
Gene description
thrombospondin type-1 domain-containing protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
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Genomic context

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See LOC123394200 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421896.1 (39984..60008, complement)

NW_025421896.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein-sorting-associated protein 36-like Neighboring gene protein FAM81A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025421896 Unplaced Scaffold Reference ASM1176430v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin type-1 domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421896.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    39984..60008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045087961.1 → XP_044943896.1  thrombospondin type-1 domain-containing protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8U0SJE0, G9KTA2
    Conserved Domains (1) summary
    smart00209
    Location:344 → 393
    TSP1; Thrombospondin type 1 repeats

  2. XM_045087962.1 → XP_044943897.1  thrombospondin type-1 domain-containing protein 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8U0SJ98
Nucleotide Protein
Heading Accession and Version

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