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LOC123416989 cytochrome c oxidase subunit 3 [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

Gene ID: 123416989, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123416989
Gene description
cytochrome c oxidase subunit 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Hordeum vulgare subsp. vulgare (sub-species: vulgare)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Genomic context

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See LOC123416989 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) Unplaced Scaffold NW_025422489.1 (295279..297681)

NW_025422489.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S3, mitochondrial Neighboring gene ribosomal protein S4, mitochondrial-like Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene uncharacterized LOC123416991 Neighboring gene uncharacterized LOC123416992 Neighboring gene transfer RNA serine (anticodon UGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025422489 Unplaced Scaffold Reference MorexV3_pseudomolecules_assembly Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytochrome-c oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c oxidase subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MorexV3_pseudomolecules_assembly Primary Assembly

Genomic

  1. NW_025422489.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Range
    295279..297681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045106846.1 → XP_044962781.1  cytochrome c oxidase subunit 3

    UniProtKB/TrEMBL
    A0A191TDJ6, A0A1C9ZNZ5, A0A1C9ZRE7
    Conserved Domains (1) summary
    cl00211
    Location:16 → 280
    Heme_Cu_Oxidase_III_like; Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The ...
Nucleotide Protein
Heading Accession and Version

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