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LOC123416990 putative cytochrome c biosynthesis ccmC-like mitochondrial protein [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

Gene ID: 123416990, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123416990
Gene description
putative cytochrome c biosynthesis ccmC-like mitochondrial protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Hordeum vulgare subsp. vulgare (sub-species: vulgare)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Genomic context

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See LOC123416990 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) Unplaced Scaffold NW_025422489.1 (356997..362692)

NW_025422489.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123416991 Neighboring gene uncharacterized LOC123416992 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene NADH-ubiquinone oxidoreductase chain 6-like Neighboring gene NADH-ubiquinone oxidoreductase chain 1-like Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene uncharacterized tatC-like protein ymf16

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025422489 Unplaced Scaffold Reference MorexV3_pseudomolecules_assembly Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytochrome complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heme transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative cytochrome c biosynthesis ccmC-like mitochondrial protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MorexV3_pseudomolecules_assembly Primary Assembly

Genomic

  1. NW_025422489.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Range
    356997..362692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045106847.1 → XP_044962782.1  putative cytochrome c biosynthesis ccmC-like mitochondrial protein

    UniProtKB/TrEMBL
    A0A1C9ZW68, M0VEJ9
    Conserved Domains (1) summary
    TIGR01191
    Location:42 → 218
    ccmC; heme exporter protein CcmC
Nucleotide Protein
Heading Accession and Version

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