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LOC123416993 ATP synthase subunit alpha, mitochondrial [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

Gene ID: 123416993, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123416993
Gene description
ATP synthase subunit alpha, mitochondrial
Gene type
protein coding
RefSeq status
MODEL
Organism
Hordeum vulgare subsp. vulgare (sub-species: vulgare)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Genomic context

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See LOC123416993 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) Unplaced Scaffold NW_025422489.1 (381406..383772)

NW_025422489.1Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone oxidoreductase chain 1-like Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene uncharacterized tatC-like protein ymf16 Neighboring gene ATP synthase subunit 9, mitochondrial Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025422489 Unplaced Scaffold Reference MorexV3_pseudomolecules_assembly Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase subunit alpha, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MorexV3_pseudomolecules_assembly Primary Assembly

Genomic

  1. NW_025422489.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Range
    381406..383772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045106849.1 → XP_044962784.1  ATP synthase subunit alpha, mitochondrial

    UniProtKB/TrEMBL
    A0A191TDI3, A0A1C9ZNX9
    Conserved Domains (1) summary
    PRK09281
    Location:6 → 503
    PRK09281; F0F1 ATP synthase subunit alpha; Validated
Nucleotide Protein
Heading Accession and Version

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