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LOC123723678 gastrula zinc finger protein XlCGF57.1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 123723678, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123723678
Gene description
gastrula zinc finger protein XlCGF57.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC123723678 in Genome Data Viewer
Location:
chromosome: ssa02
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa02 NC_059443.1 (23688599..23693674)

Chromosome ssa02 - NC_059443.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene zinc finger MYM-type protein 1 Neighboring gene ETS domain-containing transcription factor ERF-like Neighboring gene rho guanine nucleotide exchange factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059443.1 Chromosome ssa02 Reference Ssal_v3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like
Names
KRAB box and zinc finger C2H2 type domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059443.1 Reference Ssal_v3.1

    Range
    23688599..23693674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014158104.2 → XP_014013579.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A1S3NDP4
    Conserved Domains (4) summary
    COG5048
    Location:489 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:493 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:605 → 622
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:337 → 361
    zf-H2C2_2; Zinc-finger double domain

  2. XM_014158098.2 → XP_014013573.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A1S3NDP4
    Conserved Domains (4) summary
    COG5048
    Location:489 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:493 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:605 → 622
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:337 → 361
    zf-H2C2_2; Zinc-finger double domain

  3. XM_014158095.2 → XP_014013570.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A1S3NDP4
    Conserved Domains (4) summary
    COG5048
    Location:489 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:493 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:605 → 622
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:337 → 361
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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