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vps41 VPS41 subunit of HOPS complex [ Silurus meridionalis ]

Gene ID: 124403885, updated on 22-Mar-2024

Summary

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Gene symbol
vps41
Gene description
VPS41 subunit of HOPS complex
Locus tag
HF521_010771
Gene type
protein coding
RefSeq status
MODEL
Organism
Silurus meridionalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus
Orthologs
human zebrafish all
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Genomic context

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See vps41 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM1480568v1 (GCF_014805685.1) 21 NC_060904.1 (8387809..8434836, complement)

Chromosome 21 - NC_060904.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 108 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 Neighboring gene POU class 6 homeobox 2 Neighboring gene uncharacterized LOC124375656 Neighboring gene OTU deubiquitinase with linear linkage specificity a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060904.1 Chromosome 21 Reference ASM1480568v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 41 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Silurus meridionalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480568v1 Primary Assembly

Genomic

  1. NC_060904.1 Reference ASM1480568v1 Primary Assembly

    Range
    8387809..8434836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046877732.1 → XP_046733688.1  vacuolar protein sorting-associated protein 41 homolog

    UniProtKB/TrEMBL
    A0A8T0AKG1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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