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smc6 structural maintenance of chromosomes 6 [ Girardinichthys multiradiatus ]

Gene ID: 124885075, updated on 22-Mar-2024

Summary

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Gene symbol
smc6
Gene description
structural maintenance of chromosomes 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Girardinichthys multiradiatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Goodeidae; Girardinichthys
Orthologs
zebrafish all
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Genomic context

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See smc6 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
27
Annotation release Status Assembly Chr Location
100 current DD_fGirMul_XY1 (GCF_021462225.1) 19 NC_061811.1 (29793089..29814260, complement)

Chromosome 19 - NC_061811.1Genomic Context describing neighboring genes Neighboring gene AFG1 like ATPase a Neighboring gene sex comb on midleg-like protein 4 Neighboring gene visinin-like 1b Neighboring gene tudor domain-containing 6-like Neighboring gene ankyrin repeat domain-containing protein 66 Neighboring gene adhesion G protein-coupled receptor F3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_061811.1 Chromosome 19 Reference DD_fGirMul_XY1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Girardinichthys multiradiatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DD_fGirMul_XY1

Genomic

  1. NC_061811.1 Reference DD_fGirMul_XY1

    Range
    29793089..29814260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047393270.1 → XP_047249226.1  structural maintenance of chromosomes protein 6 isoform X1

  2. XM_047393271.1 → XP_047249227.1  structural maintenance of chromosomes protein 6 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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