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emx1 empty spiracles homeobox 1 [ Girardinichthys multiradiatus ]

Gene ID: 124885080, updated on 22-Mar-2024

Summary

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Gene symbol
emx1
Gene description
empty spiracles homeobox 1
See related
EnsemblRapid:ENSGMLG00005005081
Gene type
protein coding
RefSeq status
MODEL
Organism
Girardinichthys multiradiatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Goodeidae; Girardinichthys
Orthologs
zebrafish all
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Genomic context

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See emx1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
100 current DD_fGirMul_XY1 (GCF_021462225.1) 19 NC_061811.1 (32993345..32999186, complement)

Chromosome 19 - NC_061811.1Genomic Context describing neighboring genes Neighboring gene RAB11 family interacting protein 5a (class I) Neighboring gene sideroflexin 5a Neighboring gene notochord homeobox Neighboring gene uncharacterized LOC124855948

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_061811.1 Chromosome 19 Reference DD_fGirMul_XY1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein EMX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Girardinichthys multiradiatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DD_fGirMul_XY1

Genomic

  1. NC_061811.1 Reference DD_fGirMul_XY1

    Range
    32993345..32999186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047393278.1 → XP_047249234.1  homeobox protein EMX1

    Related
    ENSGMLP00005008777.1, ENSGMLT00005008987.1
Nucleotide Protein
Heading Accession and Version

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