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LOC124900270 small nucleolar RNA SNORD5 [ Homo sapiens (human) ]

Gene ID: 124900270, updated on 27-Aug-2024

Summary

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Gene symbol
LOC124900270
Gene description
small nucleolar RNA SNORD5
See related
Ensembl:ENSG00000238854
Gene type
snoRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124900270 in Genome Data Viewer
Location:
8q24.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (141447475..141447549)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (142574833..142574907)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene antisense transcript of PTP4A3, liver carcinoma survival associated Neighboring gene protein tyrosine phosphatase 4A3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142413010-142413773 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:142417407-142417907 Neighboring gene VISTA enhancer hs1882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142441707-142442687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142443451-142444139 Neighboring gene Putative chemokine-related protein FP248 Neighboring gene uncharacterized LOC105375789 Neighboring gene maestro heat like repeat family member 5 (gene/pseudogene) Neighboring gene heterogeneous nuclear ribonucleoprotein A1pseudogene 38 Neighboring gene CEB42 minisatellite repeat instability region Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142501938-142502812 Neighboring gene uncharacterized LOC124902031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142517660-142518180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    141447475..141447549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061208.1 RNA Sequence

    Related
    ENST00000458800.1

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791786.1 Reference GRCh38.p14 PATCHES

    Range
    114029..114103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069519.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187574.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    119931..120005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068640.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    142574833..142574907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079544.1 RNA Sequence

Nucleotide Protein
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