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LOC124900389 uncharacterized LOC124900389 [ Homo sapiens (human) ]

Gene ID: 124900389, updated on 27-Aug-2024

Summary

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Gene symbol
LOC124900389
Gene description
uncharacterized LOC124900389
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124900389 in Genome Data Viewer
Location:
17p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20938566..20999786)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20887381..20949945)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene CCDC144NL antisense RNA 1 Neighboring gene CCDC144A N-terminal like (pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20799361-20799876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20802310-20803177 Neighboring gene RNA, U6 small nuclear 1178, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20811295-20811890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8310 Neighboring gene ribonuclease H1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20841589-20842090 Neighboring gene Sharpr-MPRA regulatory region 15661 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20845395-20845894 Neighboring gene uncharacterized LOC339260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11875 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11874 Neighboring gene SPECC1 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20901079-20901896 Neighboring gene ubiquitin specific peptidase 22 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20937215-20937716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8311 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20946145-20947094 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20947095-20948042 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20954728-20955314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11877 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20970211-20970711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20978550-20979050 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:20987896-20989095 Neighboring gene long intergenic non-protein coding RNA 1563 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr17:21002173-21002789 and GRCh37_chr17:21002790-21003407 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:21011664-21012527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11879 Neighboring gene dehydrogenase/reductase 7B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

General protein information

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Preferred Names
uncharacterized protein LOC124900389

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20938566..20999786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047437235.1 → XP_047293191.1  uncharacterized protein LOC124900389 isoform X1

  2. XM_047437240.1 → XP_047293196.1  uncharacterized protein LOC124900389 isoform X1

  3. XM_047437233.1 → XP_047293189.1  uncharacterized protein LOC124900389 isoform X1

  4. XM_047437236.1 → XP_047293192.1  uncharacterized protein LOC124900389 isoform X1

  5. XM_047437245.1 → XP_047293201.1  uncharacterized protein LOC124900389 isoform X2

  6. XM_047437241.1 → XP_047293197.1  uncharacterized protein LOC124900389 isoform X1

  7. XM_047437243.1 → XP_047293199.1  uncharacterized protein LOC124900389 isoform X1

  8. XM_047437234.1 → XP_047293190.1  uncharacterized protein LOC124900389 isoform X1

  9. XM_047437237.1 → XP_047293193.1  uncharacterized protein LOC124900389 isoform X1

  10. XM_047437238.1 → XP_047293194.1  uncharacterized protein LOC124900389 isoform X1

  11. XM_047437239.1 → XP_047293195.1  uncharacterized protein LOC124900389 isoform X1

  12. XM_047437242.1 → XP_047293198.1  uncharacterized protein LOC124900389 isoform X1

  13. XM_047437244.1 → XP_047293200.1  uncharacterized protein LOC124900389 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20887381..20949945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054318113.1 → XP_054174088.1  uncharacterized protein LOC124900389 isoform X1

  2. XM_054318118.1 → XP_054174093.1  uncharacterized protein LOC124900389 isoform X1

  3. XM_054318111.1 → XP_054174086.1  uncharacterized protein LOC124900389 isoform X1

  4. XM_054318114.1 → XP_054174089.1  uncharacterized protein LOC124900389 isoform X1

  5. XM_054318123.1 → XP_054174098.1  uncharacterized protein LOC124900389 isoform X2

  6. XM_054318119.1 → XP_054174094.1  uncharacterized protein LOC124900389 isoform X1

  7. XM_054318121.1 → XP_054174096.1  uncharacterized protein LOC124900389 isoform X1

  8. XM_054318112.1 → XP_054174087.1  uncharacterized protein LOC124900389 isoform X1

  9. XM_054318115.1 → XP_054174090.1  uncharacterized protein LOC124900389 isoform X1

  10. XM_054318116.1 → XP_054174091.1  uncharacterized protein LOC124900389 isoform X1

  11. XM_054318117.1 → XP_054174092.1  uncharacterized protein LOC124900389 isoform X1

  12. XM_054318120.1 → XP_054174095.1  uncharacterized protein LOC124900389 isoform X1

  13. XM_054318122.1 → XP_054174097.1  uncharacterized protein LOC124900389 isoform X1

  14. XM_047446774.1 → XP_047302730.1  uncharacterized protein LOC124900389 isoform X1

Nucleotide Protein
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