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LOC124903594 small nucleolar RNA U3 [ Homo sapiens (human) ]

Gene ID: 124903594, updated on 27-Aug-2024

Summary

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Gene symbol
LOC124903594
Gene description
small nucleolar RNA U3
See related
Ensembl:ENSG00000207119
Gene type
snoRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124903594 in Genome Data Viewer
Location:
15q23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (69457941..69458149, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (67280021..67280229, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene fumarylacetoacetate hydrolase domain containing 1 pseudogene Neighboring gene kinesin family member 23 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9655 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9656 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr15:69754627-69755133 and GRCh37_chr15:69755134-69755641 Neighboring gene long intergenic non-protein coding RNA 2896 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9657 Neighboring gene ribosomal protein lateral stalk subunit P1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69791851-69792352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9658 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:69818533-69819113 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:69819114-69819694 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:69850399-69850902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69850903-69851404 Neighboring gene uncharacterized LOC124903517 Neighboring gene downregulated RNA in cancer, inhibitor of cell invasion and migration Neighboring gene prostate cancer associated transcript 29 Neighboring gene Sharpr-MPRA regulatory region 11672 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:69938726-69939304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69957399-69958014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69958631-69959245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9662 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40793

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    69457941..69458149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007064815.1 RNA Sequence

    Related
    ENST00000384391.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    67280021..67280229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086005.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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