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LINC03036 long intergenic non-protein coding RNA 3036 [ Homo sapiens (human) ]

Gene ID: 125177373, updated on 26-Oct-2023

Summary

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Official Symbol
LINC03036provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3036provided by HGNC
Primary source
HGNC:HGNC:56220
See related
Ensembl:ENSG00000229272
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TP53LC01
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Genomic context

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Location:
10q26.11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (118784544..119029571, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (119679727..119924985, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CDK2 associated cullin domain 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4103 Neighboring gene Sharpr-MPRA regulatory region 11808 Neighboring gene uncharacterized LOC107987151 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:120554781-120555336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120568144-120568912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120568913-120569681 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120602961-120603462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120603463-120603962 Neighboring gene Sharpr-MPRA regulatory region 10884 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120654814-120655422 Neighboring gene ribosomal protein L17 pseudogene 36 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:120718457-120719187 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:120719188-120719917 Neighboring gene lactate dehydrogenase A pseudogene 5 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:120781819-120782461 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:120782462-120783104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:120784290-120784863 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120788503-120789003 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2865 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2866 Neighboring gene nanos C2HC-type zinc finger 1 Neighboring gene eukaryotic translation initiation factor 3 subunit A Neighboring gene small nucleolar RNA, H/ACA box 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TP53-inducible putative long noncoding RNAs encode functional polypeptides that suppress cell proliferation. Xu W, et al. Genome Res, 2022 Jun. PMID 35609991, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186540.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157388, AL157788
    Related
    ENST00000663084.1

  2. NR_186541.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157388, AL157788

  3. NR_186542.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157788

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    118784544..119029571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    119679727..119924985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases