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ZNF428 zinc finger protein 428 [ Homo sapiens (human) ]

Gene ID: 126299, updated on 2-Nov-2024

Summary

Official Symbol
ZNF428provided by HGNC
Official Full Name
zinc finger protein 428provided by HGNC
Primary source
HGNC:HGNC:20804
See related
Ensembl:ENSG00000131116 AllianceGenome:HGNC:20804
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Zfp428; C19orf37
Summary
Predicted to enable metal ion binding activity. Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in brain (RPKM 19.1), testis (RPKM 14.8) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF428 in Genome Data Viewer
Location:
19q13.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (43607224..43619629, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (46428867..46441288, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (44111376..44123781, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14728 Neighboring gene immunity related GTPase Q Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:44098910-44099706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14730 Neighboring gene zinc finger protein 576 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:44123140-44123790 Neighboring gene uncharacterized LOC105372411 Neighboring gene serine/arginine repetitive matrix 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:44127716-44128216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:44128217-44128717 Neighboring gene cell adhesion molecule 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10725 Neighboring gene plasminogen activator, urokinase receptor Neighboring gene RNA, 7SL, cytoplasmic 368, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
zinc finger protein 428
Names
enzyme-like protein PIT13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182498.4NP_872304.2  zinc finger protein 428

    See identical proteins and their annotated locations for NP_872304.2

    Status: VALIDATED

    Source sequence(s)
    AC006276, BC015950, BC045799, CN355560
    Consensus CDS
    CCDS12626.1
    UniProtKB/Swiss-Prot
    O95054, Q6X3Y3, Q96B54
    UniProtKB/TrEMBL
    I6L9C8
    Related
    ENSP00000300811.2, ENST00000300811.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    43607224..43619629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047438168.1XP_047294124.1  zinc finger protein 428 isoform X1

    UniProtKB/Swiss-Prot
    O95054, Q6X3Y3, Q96B54

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    46428867..46441288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054319796.1XP_054175771.1  zinc finger protein 428 isoform X1

    UniProtKB/Swiss-Prot
    O95054, Q6X3Y3, Q96B54