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LOC126653383 CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:42952959-42954158 [ Homo sapiens (human) ]

Gene ID: 126653383, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126653383
Gene description
CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:42952959-42954158
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 2 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on CDK7. [provided by RefSeq, Aug 2022]
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Genomic context

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See LOC126653383 in Genome Data Viewer
Location:
chromosome: 21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (41581032..41582231)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (39970219..39971418)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene TMPRSS2 E3 enhancer Neighboring gene uncharacterized LOC124905021 Neighboring gene TMPRSS2 E4 enhancer Neighboring gene small nucleolar RNA SNORA32 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:42918133-42918311 Neighboring gene uncharacterized LOC105372809 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:42931079-42932278 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:42934014-42934514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:42934515-42935015 Neighboring gene TMPRSS2 androgen receptor-responsive -60 kb enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18483 Neighboring gene prostate cancer expressed EZH2 associated transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43024594-43025470 Neighboring gene uncharacterized LOC124905060 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43025471-43026346 Neighboring gene Sharpr-MPRA regulatory region 1599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:43032765-43033428 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43040871-43041391 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:43042456-43043655 Neighboring gene uncharacterized LOC105372812

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_081876.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    41581032..41582231
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    39970219..39971418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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