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LOC126859597 BRD4-independent group 4 enhancer GRCh37_chr6:14508670-14509869 [ Homo sapiens (human) ]

Gene ID: 126859597, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126859597
Gene description
BRD4-independent group 4 enhancer GRCh37_chr6:14508670-14509869
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126859597 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (14508439..14509638)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (14380840..14382039)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374943 Neighboring gene uncharacterized LOC105374942 Neighboring gene uncharacterized LOC101928331 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:14441647-14442345 Neighboring gene NANOG hESC enhancer GRCh37_chr6:14450188-14450778 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:14472912-14473412 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:14473413-14473913 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:14474901-14475125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:14540385-14540955 Neighboring gene uncharacterized LOC101928354 Neighboring gene Sharpr-MPRA regulatory region 399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24051 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:14639937-14640920 Neighboring gene uncharacterized LOC102724463 Neighboring gene RNA, U6 small nuclear 793, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24052 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24053

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_084098.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    14508439..14509638
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    14380840..14382039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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