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LOC126860015 MED14-independent group 3 enhancer GRCh37_chr7:42410696-42411895 [ Homo sapiens (human) ]

Gene ID: 126860015, updated on 12-Sep-2024

Summary

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Gene symbol
LOC126860015
Gene description
MED14-independent group 3 enhancer GRCh37_chr7:42410696-42411895
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 3 enhancer that depends on the BRD2, BRD4, P300/CBP and CDK7 cofactors, but it has limited or no dependence on the MED14 core Mediator complex subunit. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126860015 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (42371097..42372296)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (42529468..42530667)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (42410696..42411895)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene GLI family zinc finger 3 Neighboring gene NANOG hESC enhancer GRCh37_chr7:42178252-42178762 Neighboring gene VISTA enhancer hs1586 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 30 Neighboring gene VISTA enhancer hs111 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:42232601-42233188 Neighboring gene VISTA enhancer hs1213 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:42261657-42262165 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42267911-42268690 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:42276552-42277533 Neighboring gene uncharacterized LOC105375249 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42376548-42377052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42377053-42377557 Neighboring gene Sharpr-MPRA regulatory region 1141 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:42533107-42533607 Neighboring gene uncharacterized LOC105375250 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:42580005-42580878 Neighboring gene uncharacterized LOC105375251

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_084516.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    42371097..42372296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    42529468..42530667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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