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LOC126860065 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:68466879-68468078 [ Homo sapiens (human) ]

Gene ID: 126860065, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126860065
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:68466879-68468078
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126860065 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (69001892..69003091)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (70224659..70225858)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 231 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:68242059-68242241 Neighboring gene NANOG hESC enhancer GRCh37_chr7:68255816-68256359 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:68261521-68261673 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:68330505-68331110 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:68331111-68331716 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:68331717-68332322 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:68428181-68429380 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:68445097-68446296 Neighboring gene uncharacterized LOC105375342 Neighboring gene NANOG hESC enhancer GRCh37_chr7:68525469-68525984 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:68568933-68569682 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:68569663-68570862 Neighboring gene uncharacterized LOC105375343 Neighboring gene RNA, U6 small nuclear 832, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_084566.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    69001892..69003091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    70224659..70225858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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