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LOC126862709 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:24060471-24061670 [ Homo sapiens (human) ]

Gene ID: 126862709, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126862709
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:24060471-24061670
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (26480507..26481706)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (26674542..26675741)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13183 Neighboring gene long intergenic non-protein coding RNA 1543 Neighboring gene MPRA-validated peak3087 silencer Neighboring gene uncharacterized LOC124904274 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13185 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13188 Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene uncharacterized LOC124904273 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:24126836-24127820 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9372 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9373 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9374 Neighboring gene Sharpr-MPRA regulatory region 2175 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:24128809-24129450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:24129451-24130092 Neighboring gene Sharpr-MPRA regulatory region 221 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:24130735-24131376 Neighboring gene microRNA 8057

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_087206.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    26480507..26481706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    26674542..26675741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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