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LOC126863069 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:57638504-57639703 [ Homo sapiens (human) ]

Gene ID: 126863069, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126863069
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:57638504-57639703
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126863069 in Genome Data Viewer
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (59063449..59064648)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (60846555..60847754)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr20:57603869-57604399 Neighboring gene SLMO2-ATP5E readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18187 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13087 Neighboring gene tubulin beta 1 class VI Neighboring gene ATP synthase F1 subunit epsilon Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13088 Neighboring gene PRELI domain containing 3B Neighboring gene uncharacterized LOC124904943 Neighboring gene NANOG hESC enhancer GRCh37_chr20:57681118-57681619 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:57697082-57697631 Neighboring gene mitochondrial ribosomal protein S16 pseudogene 2 Neighboring gene zinc finger protein 831 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:57724967-57725189 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:57734401-57735226 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:57770614-57771813 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13089

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_087565.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    59063449..59064648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    60846555..60847754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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