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LOC126863234 P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:28609224-28610423 [ Homo sapiens (human) ]

Gene ID: 126863234, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126863234
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:28609224-28610423
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: X
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (28591107..28592306)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (28183064..28184263)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373152 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:28144928-28145539 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:28225271-28225984 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:28340761-28341691 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:28342327-28342882 Neighboring gene NANOG hESC enhancer GRCh37_chrX:28344371-28344922 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:28516800-28517325 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:28520815-28521331 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:28525501-28526339 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:28524662-28525500 Neighboring gene NANOG hESC enhancer GRCh37_chrX:28567658-28568252 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:28589664-28590512 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:28642971-28643592 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:28643593-28644213 Neighboring gene microRNA 6134 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:28661313-28662213 Neighboring gene interleukin 1 receptor accessory protein like 1 Neighboring gene H3 histone pseudogene 43 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:28861828-28862380 Neighboring gene uncharacterized LOC124900494

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_087730.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    28591107..28592306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    28183064..28184263
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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