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SLC39A13-AS1 SLC39A13 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 127138868, updated on 28-Oct-2024

Summary

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Official Symbol
SLC39A13-AS1provided by HGNC
Official Full Name
SLC39A13 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56351
See related
Ensembl:ENSG00000255197 AllianceGenome:HGNC:56351
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LOUP
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Genomic context

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See SLC39A13-AS1 in Genome Data Viewer
Location:
11p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (47381615..47409282, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (47540469..47568185, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (47403166..47430833, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene myosin binding protein C3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47371915-47372896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47372897-47373877 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:47387327-47387502 Neighboring gene Spi-1 proto-oncogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47395717-47396218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47399745-47400696 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:47415859-47416416 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3327 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:47421989-47422989 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:47429423-47430245 Neighboring gene microRNA 4487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47430534-47431400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47431401-47432265 Neighboring gene solute carrier family 39 member 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47435437-47435936 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:47447617-47447828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4699 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3329 Neighboring gene proteasome 26S subunit, ATPase 3 Neighboring gene uncharacterized LOC124902673 Neighboring gene uncharacterized LOC124902820 Neighboring gene receptor associated protein of the synapse

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CRISPRi screens identify the lncRNA, LOUP, as a multifunctional locus regulating macrophage differentiation and inflammatory signaling. Halasz H, et al. Proc Natl Acad Sci U S A, 2024 May 28. PMID 38781216, Free PMC Article
  2. Myeloid lncRNA LOUP mediates opposing regulatory effects of RUNX1 and RUNX1-ETO in t(8;21) AML. Trinh BQ, et al. Blood, 2021 Oct 14. PMID 33971010, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • long noncoding RNA originating from the URE of PU.1

Clone Names

  • AC090559.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_182304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090559
    Related
    ENST00000666926.1

  2. NR_182305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090559
    Related
    ENST00000655367.2

  3. NR_182306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090559
    Related
    ENST00000691591.1

  4. NR_182307.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090559
    Related
    ENST00000532340.2

  5. NR_182308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090559

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    47381615..47409282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    47540469..47568185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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