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Otof otoferlin [ Acomys russatus (golden spiny mouse) ]

Gene ID: 127211976, updated on 24-Mar-2024

Summary

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Gene symbol
Otof
Gene description
otoferlin
See related
EnsemblRapid:ENSRACG00000000886
Gene type
protein coding
RefSeq status
MODEL
Organism
Acomys russatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Deomyinae; Acomys
Orthologs
human mouse all
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Genomic context

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See Otof in Genome Data Viewer
Location:
chromosome: 1
Exon count:
46
Annotation release Status Assembly Chr Location
RS_2023_02 current mAcoRus1.1 (GCF_903995435.1) 1 NC_067137.1 (23315584..23411198, complement)

Chromosome 1 - NC_067137.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein Sm D3-like Neighboring gene dynein regulatory complex subunit 1 Neighboring gene ciliary microtubule inner protein 2C Neighboring gene calcium and integrin binding family member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067137.1 Chromosome 1 Reference mAcoRus1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AP-2 adaptor complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in plasma membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle priming IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
otoferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_903995435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mAcoRus1.1

Genomic

  1. NC_067137.1 Reference mAcoRus1.1

    Range
    23315584..23411198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051172105.1 → XP_051028062.1  otoferlin

    Related
    ENSRACP00000001189.1, ENSRACT00000001427.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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