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LOC127272353 H3K4me1 hESC enhancer GRCh37_chr2:2660703-2661676 [ Homo sapiens (human) ]

Gene ID: 127272353, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127272353
Gene description
H3K4me1 hESC enhancer GRCh37_chr2:2660703-2661676
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127272353 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (2656931..2657904)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (2667182..2668155)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (2660703..2661676)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene myelin transcription factor 1 like Neighboring gene MYT1L antisense RNA 1 Neighboring gene uncharacterized LOC105373389 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11105 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:2530602-2531801 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2569029-2569986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2641129-2641629 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2650988-2651602 Neighboring gene uncharacterized LOC107985839 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2665611-2666112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2668465-2669157 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2700671-2701170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2700169-2700670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2706918-2707875 Neighboring gene uncharacterized LOC105373390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15220 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:2775469-2775986 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:2791409-2792013 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:2792014-2792618 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:2792619-2793223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:2796071-2796790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:2796791-2797509 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:2841318-2841951 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:2845889-2846419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:2854499-2855406 Neighboring gene uncharacterized LOC124905968

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_094204.1 

    Range
    101..1074
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    2656931..2657904
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    2667182..2668155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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