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LOC127273384 NANOG hESC enhancer GRCh37_chr2:54724305-54724844 [ Homo sapiens (human) ]

Gene ID: 127273384, updated on 12-Sep-2024

Summary

Gene symbol
LOC127273384
Gene description
NANOG hESC enhancer GRCh37_chr2:54724305-54724844
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

See LOC127273384 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (54497168..54497707)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (54491180..54491719)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (54724305..54724844)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ciliary microtubule inner protein 6 Neighboring gene uncharacterized LOC102724072 Neighboring gene spectrin beta, non-erythrocytic 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:54711535-54712045 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:54725305-54725489 Neighboring gene C9orf85 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15759 Neighboring gene SPTBN1 antisense RNA 1 Neighboring gene ribosomal protein L23a pseudogene 32 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11487 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11488 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15761 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15762 Neighboring gene uncharacterized LOC124906008

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_095235.1 

    Range
    101..640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    54497168..54497707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    54491180..54491719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)