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LOC127273395 OCT4-NANOG hESC enhancer GRCh37_chr2:55635985-55636565 [ Homo sapiens (human) ]

Gene ID: 127273395, updated on 12-Sep-2024

Summary

Gene symbol
LOC127273395
Gene description
OCT4-NANOG hESC enhancer GRCh37_chr2:55635985-55636565
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Oct 2022]
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Genomic context

See LOC127273395 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (55408849..55409429)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (55406047..55406627)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (55635985..55636565)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:55509381-55510272 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:55516372-55516872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:55516873-55517373 Neighboring gene prolyl-tRNA synthetase associated domain containing 1, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7699 Neighboring gene coiled-coil domain containing 88A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:55530138-55530638 Neighboring gene uncharacterized LOC124907768 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11497 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11498 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:55669177-55669678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:55669679-55670178 Neighboring gene basic transcription factor 3 pseudogene 5 Neighboring gene RNA, U6 small nuclear 775, pseudogene

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_095246.1 

    Range
    101..681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    55408849..55409429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    55406047..55406627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)