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LOC127273976 H3K4me1 hESC enhancer GRCh37_chr2:89064099-89064600 [ Homo sapiens (human) ]

Gene ID: 127273976, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127273976
Gene description
H3K4me1 hESC enhancer GRCh37_chr2:89064099-89064600
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127273976 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (88764582..88765083)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (88773605..88774106)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89064099..89064600)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724805 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:88958311-88959220 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16172 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11733 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16174 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:88998185-88998359 Neighboring gene ribose 5-phosphate isomerase A Neighboring gene uncharacterized LOC105374853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16175 Neighboring gene Sharpr-MPRA regulatory region 15514 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11734 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11735 Neighboring gene ankyrin repeat domain 36B pseudogene 2 Neighboring gene microRNA 4436a Neighboring gene MALL pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_095826.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    88764582..88765083
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    88773605..88774106
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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