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LOC127274090 H3K4me1 hESC enhancer GRCh37_chr2:96040144-96040723 [ Homo sapiens (human) ]

Gene ID: 127274090, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127274090
Gene description
H3K4me1 hESC enhancer GRCh37_chr2:96040144-96040723
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127274090 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (95374396..95374975)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (95880877..95881456)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (96040144..96040723)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene prominin 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95964228-95964728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95971889-95972774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95974547-95975430 Neighboring gene potassium voltage-gated channel interacting protein 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95981486-95981986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95984379-95984880 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95992523-95993090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95996289-95996790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95996791-95997290 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:96008733-96008969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96041305-96041883 Neighboring gene fatty acid binding protein 7 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:96047731-96047930 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:96051115-96052015 Neighboring gene uncharacterized LOC124907858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96063267-96063766 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:96067226-96068165 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:96068166-96069104 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16186 Neighboring gene fumarylacetoacetate hydrolase domain containing 2A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96081056-96081556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96081557-96082057

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_095940.1 

    Range
    101..680
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    95374396..95374975
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791760.1 Reference GRCh38.p14 PATCHES

    Range
    136500..137079
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    95880877..95881456
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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