U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127274693 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:128158054-128158766 [ Homo sapiens (human) ]

Gene ID: 127274693, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC127274693
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:128158054-128158766
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Oct 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC127274693 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (127400478..127401190)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (127835760..127836472)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 2 Neighboring gene RNA, U6 small nuclear 1147, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128109563-128110062 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:128111582-128112160 Neighboring gene uncharacterized LOC124906074 Neighboring gene MPRA-validated peak3853 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11931 Neighboring gene MAP3K2 divergent transcript Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128172964-128173726 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128180062-128180860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128180861-128181657 Neighboring gene microRNA 4783 Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_096543.1 

    Range
    101..813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    127400478..127401190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    127835760..127836472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases