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capn1 calpain 1 [ Dicentrarchus labrax (European seabass) ]

Gene ID: 127379247, updated on 10-Oct-2024

Summary

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Gene symbol
capn1
Gene description
calpain 1
See related
Ensembl:ENSDLAG00005017924
Gene type
protein coding
RefSeq status
MODEL
Organism
Dicentrarchus labrax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Dicentrarchus
Orthologs
zebrafish all
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Genomic context

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See capn1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_02 current dlabrax2021 (GCF_905237075.1) Unplaced Scaffold NW_026136717.1 (15195646..15223481)

NW_026136717.1Genomic Context describing neighboring genes Neighboring gene phosphofurin acidic cluster sorting protein 1 Neighboring gene uncharacterized LOC127379256 Neighboring gene splicing factor 3b, subunit 2 Neighboring gene purine nucleoside phosphorylase 5a Neighboring gene uncharacterized LOC127379666

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026136717 Unplaced Scaffold Reference dlabrax2021 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-1 catalytic subunit
Names
calpain 1 catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_905237075.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference dlabrax2021 Primary Assembly

Genomic

  1. NW_026136717.1 Reference dlabrax2021 Primary Assembly

    Range
    15195646..15223481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051428619.1 → XP_051284579.1  calpain-1 catalytic subunit

    UniProtKB/TrEMBL
    A0A8C4HE22
    Related
    ENSDLAP00005041338.2, ENSDLAT00005044136.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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