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LOC127399324 H3K4me1 hESC enhancer GRCh37_chr3:184331471-184331971 [ Homo sapiens (human) ]

Gene ID: 127399324, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127399324
Gene description
H3K4me1 hESC enhancer GRCh37_chr3:184331471-184331971
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127399324 in Genome Data Viewer
Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (184613683..184614183)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (187429174..187429674)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (184331471..184331971)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909469 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184281553-184282305 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184285640-184286154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184286155-184286667 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184287010-184287956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184287957-184288903 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184293707-184294309 Neighboring gene EPH receptor B3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:184300020-184300586 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184300606-184301122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184301123-184301638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184301639-184302154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184311799-184312421 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184312422-184313043 Neighboring gene Sharpr-MPRA regulatory region 3316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184321402-184322134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184327579-184328080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184330970-184331470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184347519-184348190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20912 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:184377157-184378119 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:184378120-184379081 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184381274-184381774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184381775-184382275 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184390575-184391076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184395936-184396440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184396441-184396946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184407744-184408244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184408245-184408745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20913 Neighboring gene uncharacterized LOC107986163 Neighboring gene MAGE family member F1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_101290.1 

    Range
    101..601
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    184613683..184614183
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    187429174..187429674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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