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LOC127458277 H3K4me1 hESC enhancer GRCh37_chr7:157305630-157306130 [ Homo sapiens (human) ]

Gene ID: 127458277, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127458277
Gene description
H3K4me1 hESC enhancer GRCh37_chr7:157305630-157306130
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127458277 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (157512936..157513436)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (158701523..158702023)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (157305630..157306130)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927914 Neighboring gene Sharpr-MPRA regulatory region 4962 Neighboring gene MPRA-validated peak6872 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26930 Neighboring gene uncharacterized LOC105375610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157306131-157306631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157307834-157308764 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97964 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157313607-157314110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157314111-157314614 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:157355168-157356367 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:157357033-157358232 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:157387093-157388292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157388362-157388862 Neighboring gene uncharacterized LOC105375615 Neighboring gene protein tyrosine phosphatase receptor type N2 Neighboring gene microRNA 153-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_113050.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    157512936..157513436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    158701523..158702023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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