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LOC127458741 NANOG hESC enhancer GRCh37_chr8:12651516-12652033 [ Homo sapiens (human) ]

Gene ID: 127458741, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127458741
Gene description
NANOG hESC enhancer GRCh37_chr8:12651516-12652033
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127458741 in Genome Data Viewer
Location:
chromosome: 8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12794007..12794524)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (13060163..13060680)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12651516..12652033)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27042 Neighboring gene microRNA 5692a-2 Neighboring gene microRNA 3926-1 Neighboring gene microRNA 3926-2 Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18950 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18951 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:12612250-12612440 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12612509-12613328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27045 Neighboring gene long intergenic non-protein coding RNA 3019 Neighboring gene long intergenic non-protein coding RNA 681 Neighboring gene uncharacterized LOC105379289 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12726438-12727079 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12758236-12758737 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12799399-12799938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12808376-12808876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18955 Neighboring gene regulator of solute carriers 1 pseudogene Neighboring gene tRNA methyltransferase 9B (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_113510.1 

    Range
    101..618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12794007..12794524
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5989374..5989891
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    13060163..13060680
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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