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LOC127739538 OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58978901-58979644 [ Homo sapiens (human) ]

Gene ID: 127739538, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127739538
Gene description
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58978901-58979644
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors and is marked by the H3K27ac histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127739538 in Genome Data Viewer
Location:
chromosome: Y
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (56832754..56833497)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (62068418..62069161)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (58978901..58979644)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:28797811-28798580 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:28798753-28799442 Neighboring gene solute carrier family 25 member 15 pseudogene 1 Neighboring gene poly(ADP-ribose) polymerase family member 4 pseudogene 1 Neighboring gene CCNQ pseudogene 2 Neighboring gene meiotic recombination hotspot PAR2 Neighboring gene meiotic recombination hotspot PAR2A Neighboring gene H3K27ac hESC enhancer GRCh37_chrY:58996593-58997092 Neighboring gene OCT4 hESC enhancer GRCh37_chrY:58993067-58993568 Neighboring gene OCT4 hESC enhancer GRCh37_chrY:58991323-58991865 Neighboring gene OCT4 hESC enhancer GRCh37_chrY:58988210-58988711 Neighboring gene OCT4 hESC enhancer GRCh37_chrY:58987057-58987801 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58985458-58986055 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58982623-58983366 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58981879-58982622 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58981135-58981878 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:58979645-58980388 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58978157-58978900 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58977411-58978156 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58976667-58977410 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58975923-58976666 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrY:58975179-58975922 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58971453-58972198 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58861881-58862424 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:58862425-58862968 Neighboring gene CTBP2 pseudogene 1 Neighboring gene sprouty RTK signaling antagonist 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_115811.1 

    Range
    101..844
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    56832754..56833497
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_009646209.1 Reference GRCh38.p14 PATCHES

    Range
    46002..46745
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    62068418..62069161
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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