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Ccr8 C-C motif chemokine receptor 8 [ Mus musculus (house mouse) ]

Gene ID: 12776, updated on 2-Nov-2024

Summary

Official Symbol
Ccr8provided by MGI
Official Full Name
C-C motif chemokine receptor 8provided by MGI
Primary source
MGI:MGI:1201402
See related
Ensembl:ENSMUSG00000042262 AllianceGenome:MGI:1201402
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C-C; CCR-8; CKR-8; mCCR8; Cmkbr8; CC-CKR-8; C-C CKR-8
Summary
Enables C-C chemokine receptor activity. Acts upstream of or within chemotaxis. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Is expressed in central nervous system; retina; and thymus primordium. Orthologous to human CCR8 (C-C motif chemokine receptor 8). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in thymus adult (RPKM 6.3), mammary gland adult (RPKM 1.1) and 3 other tissues See more
Orthologs
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Genomic context

See Ccr8 in Genome Data Viewer
Location:
9 F4; 9 71.39 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (119921199..119923972)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (120092133..120094906)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene xin actin-binding repeat containing 1 Neighboring gene C-X3-C motif chemokine receptor 1 Neighboring gene predicted gene, 33858 Neighboring gene STARR-seq mESC enhancer starr_25492 Neighboring gene STARR-positive B cell enhancer ABC_E3867 Neighboring gene STARR-positive B cell enhancer ABC_E2312 Neighboring gene solute carrier family 25, member 38 Neighboring gene STARR-positive B cell enhancer ABC_E1399 Neighboring gene predicted gene, 24044 Neighboring gene ribosomal protein SA

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC123958, MGC123959

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables C-C chemokine binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables C-C chemokine receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables C-C chemokine receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in calcium-mediated signaling IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in chemokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within chemotaxis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cytosolic calcium ion concentration IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-C chemokine receptor type 8
Names
chemokine (C-C motif) receptor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007720.2NP_031746.1  C-C chemokine receptor type 8

    See identical proteins and their annotated locations for NP_031746.1

    Status: VALIDATED

    Source sequence(s)
    AC117245, Z98205
    Consensus CDS
    CCDS23621.1
    UniProtKB/Swiss-Prot
    P56484
    UniProtKB/TrEMBL
    Q27VK4, Q3ZB17
    Related
    ENSMUSP00000038473.3, ENSMUST00000048777.4
    Conserved Domains (1) summary
    PHA03087
    Location:1308
    PHA03087; G protein-coupled chemokine receptor-like protein; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    119921199..119923972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)