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LOC127814484 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17353653-17354168 [ Homo sapiens (human) ]

Gene ID: 127814484, updated on 12-Sep-2024

Summary

Gene symbol
LOC127814484
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17353653-17354168
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
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Genomic context

See LOC127814484 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (17353655..17354170)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (17366212..17366727)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (17353653..17354168)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S29 pseudogene 33 Neighboring gene ribosomal protein L31 pseudogene 42 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:17135319-17135882 Neighboring gene centlein Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17290716-17291321 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17294738-17295260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17295261-17295783 Neighboring gene VISTA enhancer hs529 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:17332022-17332668 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:17397207-17397728 Neighboring gene SAMM50 sorting and assembly machinery component pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:17539955-17540454 Neighboring gene uncharacterized LOC107987051

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_116005.1 

    Range
    101..616
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    17353655..17354170
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    17366212..17366727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)