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LOC127819473 H3K4me1 hESC enhancer GRCh37_chr10:125430545-125431046 [ Homo sapiens (human) ]

Gene ID: 127819473, updated on 12-Sep-2024

Summary

Gene symbol
LOC127819473
Gene description
H3K4me1 hESC enhancer GRCh37_chr10:125430545-125431046
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

See LOC127819473 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (123671029..123671530)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (124547825..124548326)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (125430545..125431046)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984275 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:124984539-124985040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125034867-125035366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2904 Neighboring gene long intergenic non-protein coding RNA 2641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4158 Neighboring gene VISTA enhancer hs578 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:125194236-125194421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125206418-125206918 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:125218162-125218857 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125218858-125219552 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125219553-125220248 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:125251140-125251910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125256249-125256976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125256977-125257703 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125273408-125273955 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125272859-125273407 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:125298302-125299501 Neighboring gene uncharacterized LOC105378530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125309926-125310436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125310437-125310946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4161 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125317863-125318581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125347653-125348156 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:125366796-125367386 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125399083-125399626 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125399627-125400170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125425617-125426155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125426156-125426693 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125425079-125425616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125443142-125443642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125443643-125444143 Neighboring gene uncharacterized LOC105378532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125488883-125489382 Neighboring gene G protein-coupled receptor 26 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125506649-125507630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125520224-125521126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125521127-125522029 Neighboring gene uncharacterized LOC105378533 Neighboring gene carboxypeptidase X, M14 family member 2

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_120944.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    123671029..123671530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    124547825..124548326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)