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LOC127820819 H3K4me1 hESC enhancer GRCh37_chr11:43596905-43597647 [ Homo sapiens (human) ]

Gene ID: 127820819, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127820819
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:43596905-43597647
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127820819 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (43575355..43576097)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (43730721..43731463)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (43596905..43597647)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4-like Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 Neighboring gene Sharpr-MPRA regulatory region 5565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3269 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43602229-43603028 Neighboring gene microRNA 670 Neighboring gene MIR670 host gene Neighboring gene microRNA 129-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4642 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43702143-43702708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4645 Neighboring gene ribosomal protein L23a pseudogene 63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_122278.1 

    Range
    101..843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    43575355..43576097
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    43730721..43731463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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