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LOC127821756 H3K4me1 hESC enhancer GRCh37_chr11:69157262-69158194 [ Homo sapiens (human) ]

Gene ID: 127821756, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127821756
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:69157262-69158194
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127821756 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (69342494..69343426)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (69359666..69360598)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (69157262..69158194)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:69064594-69065793 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:69066990-69067178 Neighboring gene myeloma overexpressed Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:69078345-69078844 Neighboring gene interferon induced transmembrane protein 9 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:69088091-69088958 Neighboring gene uncharacterized LOC105369370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:69153613-69154114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:69154115-69154614 Neighboring gene MPRA-validated peak1324 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:69214023-69214785 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:69215486-69215986 Neighboring gene CRISPRi-validated cis-regulatory element chr11.3768 Neighboring gene CRISPRi-validated cis-regulatory element chr11.3769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:69234157-69234732 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:69235307-69235881 Neighboring gene long intergenic non-protein coding RNA 2953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:69249331-69250160 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:69251823-69252654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:69253485-69254316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5159 Neighboring gene long intergenic non-protein coding RNA 2952 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3693 Neighboring gene uncharacterized LOC124902703

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_123201.1 

    Range
    101..1033
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    69342494..69343426
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    69359666..69360598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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