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LOC127822147 H3K4me1 hESC enhancer GRCh37_chr11:75896164-75896944 [ Homo sapiens (human) ]

Gene ID: 127822147, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127822147
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:75896164-75896944
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127822147 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (76185120..76185900)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (76114836..76115616)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (75896164..75896944)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene UV radiation resistance associated Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1A pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5282 Neighboring gene RNA, 5S ribosomal pseudogene 344 Neighboring gene MPRA-validated peak1353 silencer Neighboring gene VISTA enhancer hs1435 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:75769360-75769545 Neighboring gene NANOG hESC enhancer GRCh37_chr11:75831587-75832314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75863001-75863881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75875819-75876512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75886811-75887552 Neighboring gene Sharpr-MPRA regulatory region 10154 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75887553-75888295 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75895382-75896163 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75897726-75898505 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75918003-75918670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75920005-75920671 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75920672-75921338 Neighboring gene uncharacterized LOC112268079 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3780 Neighboring gene long intergenic non-protein coding RNA 2761 Neighboring gene Wnt family member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_123590.1 

    Range
    101..881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    76185120..76185900
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    76114836..76115616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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