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LOC127822613 OCT4 hESC enhancer GRCh37_chr11:116766707-116767208 [ Homo sapiens (human) ]

Gene ID: 127822613, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127822613
Gene description
OCT4 hESC enhancer GRCh37_chr11:116766707-116767208
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the OCT4 transcription factor. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127822613 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (116895991..116896492)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (116911102..116911603)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (116766707..116767208)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116700143-116701075 Neighboring gene APOA1 antisense RNA Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3925 Neighboring gene apolipoprotein C3 Neighboring gene apolipoprotein A1 Neighboring gene SIK family kinase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5557 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5558 Neighboring gene MPRA-validated peak1483 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3927 Neighboring gene MPRA-validated peak1484 silencer Neighboring gene MPRA-validated peak1485 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5560 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:116881555-116882207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5561 Neighboring gene RNY4 pseudogene 6 Neighboring gene ribosomal protein S27 pseudogene 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_124053.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    116895991..116896492
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    116911102..116911603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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