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LOC127825927 H3K4me1 hESC enhancer GRCh37_chr13:24965836-24966558 [ Homo sapiens (human) ]

Gene ID: 127825927, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127825927
Gene description
H3K4me1 hESC enhancer GRCh37_chr13:24965836-24966558
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127825927 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (24391698..24392420)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (23599122..23599844)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (24965836..24966558)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene cell cycle exit and neuronal differentiation protein 1-like Neighboring gene cell cycle exit and neuronal differentiation 1 pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 566 Neighboring gene NUS1 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 8397 Neighboring gene CYCS pseudogene 33 Neighboring gene NANOG hESC enhancer GRCh37_chr13:24993751-24994256 Neighboring gene poly(ADP-ribose) polymerase family member 4 Neighboring gene OCT4 hESC enhancer GRCh37_chr13:25018880-25019381 Neighboring gene uncharacterized LOC105370117 Neighboring gene Sharpr-MPRA regulatory region 4719 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5178

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_127439.1 

    Range
    101..823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    24391698..24392420
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    23599122..23599844
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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