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LOC127826564 OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80932978-80933742 [ Homo sapiens (human) ]

Gene ID: 127826564, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127826564
Gene description
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80932978-80933742
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors and is marked by the H3K27ac histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127826564 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (80358843..80359607)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (79586915..79587679)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927238 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:80792397-80792897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5428 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5429 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:80917085-80917883 Neighboring gene uncharacterized LOC105370276 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80933743-80934507 Neighboring gene sprouty RTK signaling antagonist 2 Neighboring gene RNA, U6 small nuclear 61, pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33391 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:81064487-81064988 Neighboring gene Sharpr-MPRA regulatory region 14274 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33432 Neighboring gene uncharacterized LOC124903240

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_128071.1 

    Range
    101..865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    80358843..80359607
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    79586915..79587679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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