U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127826865 NANOG hESC enhancer GRCh37_chr13:110364549-110365058 [ Homo sapiens (human) ]

Gene ID: 127826865, updated on 12-Sep-2024

Summary

Gene symbol
LOC127826865
Gene description
NANOG hESC enhancer GRCh37_chr13:110364549-110365058
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Nov 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC127826865 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (109712202..109712711)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (108940730..108941239)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (110364549..110365058)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984602 Neighboring gene uncharacterized LOC124903210 Neighboring gene uncharacterized LOC101927627 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:110317890-110319089 Neighboring gene Sharpr-MPRA regulatory region 15042 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110385669-110386170 Neighboring gene long intergenic non-protein coding RNA 676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:110390318-110390818 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:110390819-110391319 Neighboring gene insulin receptor substrate 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110434285-110434851 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110437437-110438066 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5498

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_128370.1 

    Range
    101..610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    109712202..109712711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    108940730..108941239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)