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LOC127883871 H3K4me1 hESC enhancer GRCh37_chr16:49312251-49312775 [ Homo sapiens (human) ]

Gene ID: 127883871, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127883871
Gene description
H3K4me1 hESC enhancer GRCh37_chr16:49312251-49312775
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127883871 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (49278340..49278864)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (55076110..55076634)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371241 Neighboring gene Sharpr-MPRA regulatory region 1667 Neighboring gene uncharacterized LOC102724847 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:49247419-49248016 Neighboring gene NANOG hESC enhancer GRCh37_chr16:49250537-49251060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49309093-49309618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49310145-49310670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49311724-49312250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49314853-49315470 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7459 Neighboring gene uncharacterized LOC102724859 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7460 Neighboring gene cerebellin 1 precursor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49346195-49346696 Neighboring gene uncharacterized LOC105371243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49346697-49347196

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_133770.1 

    Range
    101..625
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    49278340..49278864
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    55076110..55076634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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