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LOC127883920 H3K4me1 hESC enhancer GRCh37_chr16:49802443-49803319 [ Homo sapiens (human) ]

Gene ID: 127883920, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127883920
Gene description
H3K4me1 hESC enhancer GRCh37_chr16:49802443-49803319
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127883920 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (49768532..49769408)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (55566230..55567112)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (49802443..49803319)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 423 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49746094-49746661 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49746662-49747228 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49753579-49754080 Neighboring gene mitochondrial ribosomal protein S21 pseudogene 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49778329-49778910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49780200-49780700 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49787863-49788521 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49788522-49789180 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49807897-49808408 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49809947-49810458 Neighboring gene mitochondrial ribosomal protein S21 pseudogene 8 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:49834328-49834828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10807 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49842480-49843425 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49843426-49844370 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49844371-49845316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49855155-49855693 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49855694-49856231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49862291-49862838 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49869044-49869874 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49869875-49870704 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49871536-49872365 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49873197-49874025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7462 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7463 Neighboring gene Sharpr-MPRA regulatory region 4070 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49955517-49956248 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:49956925-49957108 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:49958091-49958263 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49962303-49962803 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49968907-49969407 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7464 Neighboring gene ribosomal protein L34 pseudogene 29 Neighboring gene nuclear receptor coactivator 5 like, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_133819.1 

    Range
    101..977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    49768532..49769408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    55566230..55567112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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