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LOC127887339 H3K4me1 hESC enhancer GRCh37_chr17:48921781-48922306 [ Homo sapiens (human) ]

Gene ID: 127887339, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127887339
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:48921781-48922306
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127887339 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (50844420..50844945)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (51711555..51712080)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (48921781..48922306)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene microRNA 8059 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:48875946-48876496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:48876497-48877047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48877048-48877597 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:48883528-48883749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12391 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12392 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8712 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:48907716-48908587 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:48908588-48909458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48909618-48910138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48910139-48910659 Neighboring gene WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 Neighboring gene ribosomal protein L5 pseudogene 33 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12393 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8713 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8714 Neighboring gene TOB1 antisense RNA 1 Neighboring gene transducer of ERBB2, 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_136990.1 

    Range
    101..626
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    50844420..50844945
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    51711555..51712080
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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