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LOC127887696 OCT4-NANOG hESC enhancer GRCh37_chr17:65598997-65599506 [ Homo sapiens (human) ]

Gene ID: 127887696, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127887696
Gene description
OCT4-NANOG hESC enhancer GRCh37_chr17:65598997-65599506
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127887696 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (67602881..67603390)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (68478423..68478933)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (65598997..65599506)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12624 Neighboring gene microRNA 548aa-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12626 Neighboring gene microRNA 548d-2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65515294-65515797 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65515798-65516300 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65516301-65516804 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65516805-65517306 Neighboring gene Sharpr-MPRA regulatory region 6638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65525829-65526481 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65535333-65535834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65535835-65536334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65551665-65552166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65552167-65552666 Neighboring gene uncharacterized LOC124904045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12627 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65595554-65595782 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65636212-65636398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65651209-65651710 Neighboring gene uncharacterized LOC101928045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65715225-65715946 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65717475-65717706 Neighboring gene MPRA-validated peak2955 silencer Neighboring gene nucleolar protein 11 Neighboring gene small nucleolar RNA, H/ACA box 38B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_137331.1 

    Range
    101..610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    67602881..67603390
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    68478423..68478933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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