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LOC127888394 H3K4me1 hESC enhancer GRCh37_chr17:78829045-78829576 [ Homo sapiens (human) ]

Gene ID: 127888394, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127888394
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:78829045-78829576
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127888394 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (80855245..80855776)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81760775..81761306)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene regulatory associated protein of MTOR complex 1 Neighboring gene uncharacterized LOC101928855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78785069-78785570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78794217-78794820 Neighboring gene uncharacterized LOC124904076 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78801060-78801750 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78801751-78802440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78805646-78806418 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:78807023-78807239 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78807964-78808735 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:78829770-78830969 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78831337-78832266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78847077-78848036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78852392-78852991 Neighboring gene uncharacterized LOC124904075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78933187-78933704 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78937983-78938532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78939083-78939632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78943614-78944419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78944420-78945224 Neighboring gene uncharacterized LOC400627

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_137991.1 

    Range
    101..632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    80855245..80855776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    81760775..81761306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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